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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ESR1
wikigenes
PDBj
CellType: VCaP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX222274
GSM1076111: VCaP ERa + E2 [ERα ChIP-Seq]; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ESR1
Cell type
Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
VCaP ERa cell line
cell line
Prostate cancer cell line overexpressing ERa
agent
E2
passages
10 to 12
chip antibody
ERα (diagenode, AC-066-100, lot # 001)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
247782619
Reads aligned (%)
73.9
Duplicates removed (%)
35.0
Number of peaks
4089 (qval < 1E-05)
hg19
Number of total reads
247782619
Reads aligned (%)
73.2
Duplicates removed (%)
36.7
Number of peaks
3055 (qval < 1E-05)
Base call quality data from
DBCLS SRA